Pseudomonas protegens Pf-5, PFL_1574 (speB)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_1574
Name	speB
Replicon	chromosome
Genomic location	1772577 - 1773527 (- strand)

Cross-References

RefSeq	YP_258700.2
GI	346642812
EC Number	3.5.3.11
Entrez	3476482
INSDC	AAY90871.2
NCBI Locus Tag	PFL_1574
UniParc	UPI000219FF49
UniProtKB Acc	Q4KGD3
UniProtKB ID	Q4KGD3_PSEF5
UniRef100	UniRef100_Q4KGD3
UniRef50	UniRef50_Q9I3S3
UniRef90	UniRef90_Q4KGD3

Product

Feature Type	CDS
Coding Frame	1
Product Name	agmatinase
Synonyms
Evidence for Translation
Charge (pH 7)	-11.26
Kyte-Doolittle Hydrophobicity Value	0.025
Molecular Weight (kDa)	34.2
Isoelectric Point (pI)	5.18

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
3NIO	HYDROLASE	06/16/10	Crystal structure of Pseudomonas aeruginosa guanidinobutyrase	Pseudomonas aeruginosa	2	X-RAY DIFFRACTION	91.8

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 432 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001341 (475 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_1574 Search term: speB Search term: agmatinase

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000364986 agmatinase [Source:HGNC Symbol;Acc:HGNC:18407] E-value: 4.2e-113 Percent Identity: 63.0

References