Pseudomonas protegens Pf-5, PFL_1304

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_1304
Name
Replicon	chromosome
Genomic location	1474640 - 1476919 (- strand)

Cross-References

RefSeq	YP_258433.1
GI	70728684
Entrez	3475770
INSDC	AAY90589.1
NCBI Locus Tag	PFL_1304
UniParc	UPI000054D05B
UniProtKB Acc	Q4KH50
UniProtKB ID	Q4KH50_PSEF5
UniRef100	UniRef100_Q4KH50
UniRef50	UniRef50_Q9HYT3
UniRef90	UniRef90_Q4KH50

Product

Feature Type	CDS
Coding Frame	1
Product Name	signaling repeat/GGDEF domain/EAL domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7)	-4.64
Kyte-Doolittle Hydrophobicity Value	0.136
Molecular Weight (kDa)	83808.3
Isoelectric Point (pI)	6.72

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 456 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002307 (481 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_1304 Search term: signaling repeat/GGDEF domain/EAL domain-containing protein

Human Homologs

References