Pseudomonas protegens Pf-5, PFL_1247 (rimO)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_1247
Name
rimO
Replicon chromosome
Genomic location 1416287 - 1417624 (- strand)

Cross-References

RefSeq YP_258378.1
GI 70728629
EC Number 2.1.1.-
EC Number 2.8.1.-
Entrez 3477424
INSDC AAY90534.1
NCBI Locus Tag PFL_1247
UniParc UPI000054D025
UniProtKB Acc Q4KHA5
UniProtKB ID RIMO_PSEF5
UniRef100 UniRef100_Q4KHA5
UniRef50 UniRef50_A8AIT5
UniRef90 UniRef90_Q4KHA5

Product

Feature Type CDS
Coding Frame 1
Product Name
30S ribosomal protein S12 methylthiotransferase
Synonyms
Evidence for Translation
Charge (pH 7) -20.15
Kyte-Doolittle Hydrophobicity Value -0.159
Molecular Weight (kDa) 49.5
Isoelectric Point (pI) 4.62

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 640 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000882 (537 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_1247
Search term: rimO

Human Homologs

References

No references are associated with this feature.