Pseudomonas protegens Pf-5, PFL_0917 (lptA)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_0917
Name	lptA
Replicon	chromosome
Genomic location	1061277 - 1061822 (- strand)

Cross-References

RefSeq	YP_258048.1
GI	70728299
Entrez	3477445
INSDC	AAY90204.1
NCBI Locus Tag	PFL_0917
UniParc	UPI000054CEDB
UniProtKB Acc	Q4KI85
UniProtKB ID	Q4KI85_PSEF5
UniRef100	UniRef100_Q4KI85
UniRef50	UniRef50_A6VBD4
UniRef90	UniRef90_Q4KI85

Product

Feature Type	CDS
Coding Frame	1
Product Name	lipopolysaccharide ABC transporter periplasmic lipopolysaccharide-binding protein LptA
Synonyms
Evidence for Translation
Charge (pH 7)	4.23
Kyte-Doolittle Hydrophobicity Value	-0.372
Molecular Weight (kDa)	19.6
Isoelectric Point (pI)	9.80

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 121 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004049 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_0917 Search term: lptA Search term: lipopolysaccharide ABC transporter periplasmic lipopolysaccharide-binding protein LptA

Human Homologs

References