Pseudomonas protegens Pf-5, PFL_0848 (pnp)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_0848
Name	pnp
Replicon	chromosome
Genomic location	977948 - 980059 (+ strand)

Cross-References

RefSeq	YP_257981.1
GI	70734341
EC Number	2.7.7.8
Entrez	3481429
INSDC	AAY96246.1
NCBI Locus Tag	PFL_0848
UniParc	UPI000054CE99
UniProtKB Acc	Q4KIF2
UniProtKB ID	PNP_PSEF5
UniRef100	UniRef100_Q4KIF2
UniRef50	UniRef50_P41121
UniRef90	UniRef90_A4XYD6

Product

Feature Type	CDS
Coding Frame	1
Product Name	polynucleotide phosphorylase
Synonyms
Evidence for Translation
Charge (pH 7)	-18.13
Kyte-Doolittle Hydrophobicity Value	-0.025
Molecular Weight (kDa)	75161.4
Isoelectric Point (pI)	4.88

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 663 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004385 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_0848 Search term: pnp Search term: polynucleotide phosphorylase

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000400646 polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23166] E-value: 1.3e-111 Percent Identity: 35.6
Ensembl 110, assembly GRCh38.p14	ENSP00000393953 polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23166] E-value: 1.3e-111 Percent Identity: 35.6

References