Pseudomonas protegens Pf-5, PFL_0763

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0763
Name
Replicon chromosome
Genomic location 889363 - 890766 (+ strand)

Cross-References

RefSeq YP_257900.2
GI 346642721
Entrez 3481347
INSDC AAY96165.2
NCBI Locus Tag PFL_0763
UniParc UPI000219FEC8
UniProtKB Acc Q4KIN3
UniProtKB ID Q4KIN3_PSEF5
UniRef100 UniRef100_Q4KIN3
UniRef50 UniRef50_F0KFV8
UniRef90 UniRef90_Q4KIN3

Product

Feature Type CDS
Coding Frame 1
Product Name
APC family amino acid permease
Synonyms
Evidence for Translation
Charge (pH 7) 12.56
Kyte-Doolittle Hydrophobicity Value 0.787
Molecular Weight (kDa) 51.0
Isoelectric Point (pI) 9.69

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 359 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000219 (3043 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0763

Human Homologs

Ensembl 110, assembly GRCh38.p14
solute carrier family 7 member 4 [Source:HGNC Symbol;Acc:HGNC:11062]
E-value: 6.2e-12
Percent Identity: 26.8
Ensembl 110, assembly GRCh38.p14
novel protein
E-value: 6.2e-12
Percent Identity: 26.8
Ensembl 110, assembly GRCh38.p14
solute carrier family 7 member 4 [Source:HGNC Symbol;Acc:HGNC:11062]
E-value: 6.2e-12
Percent Identity: 26.8

References

No references are associated with this feature.