Pseudomonas protegens Pf-5, PFL_0348

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0348
Name
Replicon chromosome
Genomic location 402492 - 403217 (+ strand)

Cross-References

RefSeq YP_257493.1
GI 70733853
Entrez 3480940
INSDC AAY95758.1
NCBI Locus Tag PFL_0348
UniParc UPI000054CCB2
UniProtKB Acc Q4KJU0
UniProtKB ID Q4KJU0_PSEF5
UniRef100 UniRef100_Q4KJU0
UniRef50 UniRef50_Q4KJU0
UniRef90 UniRef90_Q4KJU0

Product

Feature Type CDS
Coding Frame 1
Product Name
IclR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) 1.04
Kyte-Doolittle Hydrophobicity Value -0.081
Molecular Weight (kDa) 26520.3
Isoelectric Point (pI) 7.46

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 275 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002441 (346 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0348

Human Homologs

References

No references are associated with this feature.