Pseudomonas protegens Pf-5, PFL_0340

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0340
Name
Replicon chromosome
Genomic location 393896 - 394585 (- strand)

Cross-References

RefSeq YP_257485.1
GI 70733845
Entrez 3480932
INSDC AAY95750.1
NCBI Locus Tag PFL_0340
UniParc UPI000054CCAA
UniProtKB Acc Q4KJU8
UniProtKB ID Q4KJU8_PSEF5
UniRef100 UniRef100_Q4KJU8
UniRef50 UniRef50_Q4K830
UniRef90 UniRef90_E2XKU1

Product

Feature Type CDS
Coding Frame 1
Product Name
amino acid ABC transporter permease
Synonyms
Evidence for Translation
Charge (pH 7) 7.16
Kyte-Doolittle Hydrophobicity Value 0.652
Molecular Weight (kDa) 25.9
Isoelectric Point (pI) 9.75

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 443 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004747 (526 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0340

Human Homologs

References

No references are associated with this feature.