Pseudomonas protegens Pf-5, PFL_0078 (np20)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0078
Name
np20
Replicon chromosome
Genomic location 75841 - 76323 (- strand)

Cross-References

RefSeq YP_257230.1
GI 70733590
Entrez 3480677
INSDC AAY95495.1
NCBI Locus Tag PFL_0078
UniParc UPI000054CBAC
UniProtKB Acc Q4KKK3
UniProtKB ID Q4KKK3_PSEF5
UniRef100 UniRef100_Q4KKK3
UniRef50 UniRef50_G8PX48
UniRef90 UniRef90_Q4KKK3

Product

Feature Type CDS
Coding Frame 1
Product Name
transcriptional regulator np20
Synonyms
Evidence for Translation
Charge (pH 7) 0.18
Kyte-Doolittle Hydrophobicity Value -0.026
Molecular Weight (kDa) 17.4
Isoelectric Point (pI) 7.04

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 288 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG005038 (538 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0078
Search term: np20

Human Homologs

References

No references are associated with this feature.