Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a4344

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
GCF_000194805.1|latest
Locus Tag
PSEBR_a4344
Name
Replicon chromosome
Genomic location 5283751 - 5284878 (+ strand)

Cross-References

RefSeq YP_004355755.1
GI 330811293
Entrez 10473504
INSDC AEA70751.1
NCBI Locus Tag PSEBR_a4344
UniParc UPI0002041AD8
UniProtKB Acc F2KC98
UniProtKB ID F2KC98_PSEBN
UniRef100 UniRef100_A0A0D0R0Q0
UniRef50 UniRef50_D7I1J1
UniRef90 UniRef90_G8Q6S7

Product

Feature Type CDS
Coding Frame 1
Product Name
glycerophosphodiester phosphodiesterase
Synonyms
Evidence for Translation
Charge (pH 7) 0.69
Kyte-Doolittle Hydrophobicity Value -0.348
Molecular Weight (kDa) 41.0
Isoelectric Point (pI) 7.26

Subcellular localization

Individual Mappings
Localization Confidence PMID
Periplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 379 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000339 (769 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSEBR_a4344

Human Homologs

Ensembl 110, assembly GRCh38.p14
glycerophosphodiester phosphodiesterase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25974]
E-value: 1.6e-15
Percent Identity: 41.7
Ensembl 110, assembly GRCh38.p14
glycerophosphodiester phosphodiesterase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25974]
E-value: 1.6e-15
Percent Identity: 41.7
Ensembl 110, assembly GRCh38.p14
glycerophosphodiester phosphodiesterase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25974]
E-value: 1.6e-15
Percent Identity: 41.7
Ensembl 110, assembly GRCh38.p14
glycerophosphodiester phosphodiesterase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25974]
E-value: 1.6e-15
Percent Identity: 41.7

References

No references are associated with this feature.