Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_0968 (rfbD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas savastanoi pv. phaseolicola 1448A
GCF_000012205.1|latest
Locus Tag
PSPPH_0968
Name
rfbD
Replicon chromosome
Genomic location 1151358 - 1152263 (- strand)

Cross-References

RefSeq YP_273240.1
GI 71735408
EC Number 1.1.1.133
Entrez 3557748
INSDC AAZ35172.1
NCBI Locus Tag PSPPH_0968
UniParc UPI000057537B
UniProtKB Acc Q48MY2
UniProtKB ID Q48MY2_PSE14
UniRef100 UniRef100_Q48MY2
UniRef50 UniRef50_Q48MY2
UniRef90 UniRef90_Q48MY2

Product

Feature Type CDS
Coding Frame 1
Product Name
dTDP-4-dehydrorhamnose reductase
Synonyms
Evidence for Translation
Charge (pH 7) -3.11
Kyte-Doolittle Hydrophobicity Value -0.136
Molecular Weight (kDa) 32355.5
Isoelectric Point (pI) 6.31

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 493 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004753 (531 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPPH_0968
Search term: rfbD

Human Homologs

Ensembl 110, assembly GRCh38.p14
methionine adenosyltransferase 2B [Source:HGNC Symbol;Acc:HGNC:6905]
E-value: 3.0e-20
Percent Identity: 30.7
Ensembl 110, assembly GRCh38.p14
methionine adenosyltransferase 2B [Source:HGNC Symbol;Acc:HGNC:6905]
E-value: 3.0e-20
Percent Identity: 30.7

References

No references are associated with this feature.