Pseudomonas syringae pv. tomato DC3000, PSPTO_B0013

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_B0013
NCBI Old Locus Tag	PSPTOB0013
Name	Synonym: PSPTOB0013
Replicon	plasmid pDC3000B
Genomic location	14664 - 15446 (- strand)

Cross-References

RefSeq	NP_808603.1
GI	29171557
Entrez	1187391
INSDC	AAO59106.1
NCBI Locus Tag	PSPTO_B0013
NCBI Old Locus Tag	PSPTOB0013
UniParc	UPI0000002D31
UniProtKB Acc	Q88BV8
UniProtKB ID	Q88BV8_PSESM
UniRef100	UniRef100_Q88BV8
UniRef50	UniRef50_Q5E5R1
UniRef90	UniRef90_Q6J2D1

Product

Feature Type	CDS
Coding Frame	1
Product Name	hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7)	-6.12
Kyte-Doolittle Hydrophobicity Value	-0.246
Molecular Weight (kDa)	29.7
Isoelectric Point (pI)	6.17

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 108 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001521 (347 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_B0013

Human Homologs

References