Pseudomonas syringae pv. tomato DC3000, PSPTO_5421

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_5421
NCBI Old Locus Tag	PSPTO5421
Name	Synonym: PSPTO5421
Replicon	chromosome
Genomic location	6163099 - 6163599 (- strand)

Cross-References

RefSeq	NP_795148.1
GI	28872529
Entrez	1187108
INSDC	AAO58843.1
NCBI Locus Tag	PSPTO_5421
NCBI Old Locus Tag	PSPTO5421
UniParc	UPI0000009691
UniProtKB Acc	Q87U86
UniProtKB ID	Q87U86_PSESM
UniRef100	UniRef100_Q87U86
UniRef50	UniRef50_Q9I359
UniRef90	UniRef90_Q87U86

Product

Feature Type	CDS
Coding Frame	1
Product Name	lipoprotein
Synonyms
Evidence for Translation
Charge (pH 7)	-4.56
Kyte-Doolittle Hydrophobicity Value	-0.182
Molecular Weight (kDa)	18.4
Isoelectric Point (pI)	4.81

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 79 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000079 (812 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_5421 Search term: lipoprotein

Human Homologs

References