Pseudomonas syringae pv. tomato DC3000, PSPTO_5111

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_5111
NCBI Old Locus Tag	PSPTO5111
Name	Synonym: PSPTO5111
Replicon	chromosome
Genomic location	5811163 - 5812056 (- strand)

Cross-References

RefSeq	NP_794843.1
GI	28872224
Entrez	1186796
INSDC	AAO58538.1
NCBI Locus Tag	PSPTO_5111
NCBI Old Locus Tag	PSPTO5111
UniParc	UPI000000956A
UniProtKB Acc	Q87V30
UniProtKB ID	Q87V30_PSESM
UniRef100	UniRef100_Q87V30
UniRef50	UniRef50_Q48PF5
UniRef90	UniRef90_Q48PF5

Product

Feature Type	CDS
Coding Frame	1
Product Name	LysR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7)	-4.03
Kyte-Doolittle Hydrophobicity Value	0.181
Molecular Weight (kDa)	32.5
Isoelectric Point (pI)	5.43

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 545 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003437 (1043 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_5111 Search term: LysR family transcriptional regulator

Human Homologs

References