Pseudomonas syringae pv. tomato DC3000, PSPTO_4984 (msbA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_4984
NCBI Old Locus TagPSPTO4984
Name
msbA
Synonym: PSPTO4984
Replicon chromosome
Genomic location 5656790 - 5658664 (- strand)

Cross-References

RefSeq NP_794717.1
GI 28872098
Entrez 1186669
INSDC AAO58412.1
NCBI Locus Tag PSPTO_4984
NCBI Old Locus Tag PSPTO4984
UniParc UPI0000351A58
UniProtKB Acc Q87VF3
UniProtKB ID MSBA_PSESM
UniRef100 UniRef100_Q87VF3
UniRef50 UniRef50_Q9HUG8
UniRef90 UniRef90_Q87VF3

Product

Feature Type CDS
Coding Frame 1
Product Name
lipid A ABC transporter, ATP-binding/permease protein
Synonyms
Evidence for Translation
Charge (pH 7) 2.66
Kyte-Doolittle Hydrophobicity Value 0.256
Molecular Weight (kDa) 68.4
Isoelectric Point (pI) 7.97

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004607 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_4984
Search term: msbA

Human Homologs

Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 9 [Source:HGNC Symbol;Acc:HGNC:50]
E-value: 4.3e-77
Percent Identity: 33.5
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 9 [Source:HGNC Symbol;Acc:HGNC:50]
E-value: 4.3e-77
Percent Identity: 33.5
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 9 [Source:HGNC Symbol;Acc:HGNC:50]
E-value: 4.3e-77
Percent Identity: 33.5

References

No references are associated with this feature.