Pseudomonas syringae pv. tomato DC3000, PSPTO_4920

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_4920
NCBI Old Locus TagPSPTO4920
Name
Synonym: PSPTO4920
Replicon chromosome
Genomic location 5569357 - 5570262 (+ strand)

Cross-References

RefSeq NP_794653.1
GI 28872034
Entrez 1186603
INSDC AAO58348.1
NCBI Locus Tag PSPTO_4920
NCBI Old Locus Tag PSPTO4920
UniParc UPI00000094B0
UniProtKB Acc Q87VL6
UniProtKB ID Q87VL6_PSESM
UniRef100 UniRef100_Q87VL6
UniRef50 UniRef50_Q48NY0
UniRef90 UniRef90_Q48NY0

Product

Feature Type CDS
Coding Frame 1
Product Name
LysR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) -3.26
Kyte-Doolittle Hydrophobicity Value -0.187
Molecular Weight (kDa) 34.4
Isoelectric Point (pI) 6.51

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 492 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000439 (1015 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_4920

Human Homologs

References

No references are associated with this feature.