Pseudomonas syringae pv. tomato DC3000, PSPTO_4501 (carB)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4501
NCBI Old Locus Tag	PSPTO4501
Name	carB Synonym: PSPTO4501
Replicon	chromosome
Genomic location	5068738 - 5071959 (- strand)

Cross-References

RefSeq	NP_794254.1
GI	28871635
Entrez	1186184
INSDC	AAO57949.1
NCBI Locus Tag	PSPTO_4501
NCBI Old Locus Tag	PSPTO4501
UniParc	UPI000000933A
UniProtKB Acc	Q87WP4
UniProtKB ID	CARB_PSESM
UniRef100	UniRef100_Q87WP4
UniRef50	UniRef50_P00968
UniRef90	UniRef90_Q88DU6

Product

Feature Type	CDS
Coding Frame	1
Product Name	carbamoyl-phosphate synthase large subunit
Synonyms
Evidence for Translation
Charge (pH 7)	-28.41
Kyte-Doolittle Hydrophobicity Value	-0.094
Molecular Weight (kDa)	117.6
Isoelectric Point (pI)	4.90

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown (This protein may have multiple localization sites) Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 625 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004401 (534 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4501 Search term: carB Search term: carbamoyl-phosphate synthase large subunit

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000501022 carbamoyl-phosphate synthase 1 [Source:HGNC Symbol;Acc:HGNC:2323] E-value: 2.1e-228 Percent Identity: 40.8
Ensembl 110, assembly GRCh38.p14	ENSP00000402608 carbamoyl-phosphate synthase 1 [Source:HGNC Symbol;Acc:HGNC:2323] E-value: 2.1e-228 Percent Identity: 40.8
Ensembl 110, assembly GRCh38.p14	ENSP00000501073 carbamoyl-phosphate synthase 1 [Source:HGNC Symbol;Acc:HGNC:2323] E-value: 2.1e-228 Percent Identity: 40.8
Ensembl 110, assembly GRCh38.p14	ENSP00000500537 carbamoyl-phosphate synthase 1 [Source:HGNC Symbol;Acc:HGNC:2323] E-value: 2.1e-228 Percent Identity: 40.8
Ensembl 110, assembly GRCh38.p14	ENSP00000233072 carbamoyl-phosphate synthase 1 [Source:HGNC Symbol;Acc:HGNC:2323] E-value: 2.1e-228 Percent Identity: 40.8

References