Pseudomonas syringae pv. tomato DC3000, PSPTO_4316 (sbcB)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4316
NCBI Old Locus Tag	PSPTO4316
Name	sbcB Synonym: PSPTO4316
Replicon	chromosome
Genomic location	4866365 - 4867795 (- strand)

Cross-References

RefSeq	NP_794072.1
GI	28871453
Entrez	1185997
INSDC	AAO57767.1
NCBI Locus Tag	PSPTO_4316
NCBI Old Locus Tag	PSPTO4316
UniParc	UPI0000009289
UniProtKB Acc	Q87X72
UniProtKB ID	Q87X72_PSESM
UniRef100	UniRef100_Q87X72
UniRef50	UniRef50_Q9HW85
UniRef90	UniRef90_Q87X72

Product

Feature Type	CDS
Coding Frame	1
Product Name	exodeoxyribonuclease I
Synonyms
Evidence for Translation
Charge (pH 7)	-9.91
Kyte-Doolittle Hydrophobicity Value	-0.440
Molecular Weight (kDa)	54.4
Isoelectric Point (pI)	5.76

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 114 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003914 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4316 Search term: sbcB Search term: exodeoxyribonuclease I

Human Homologs

References