Pseudomonas syringae pv. tomato DC3000, PSPTO_3863 (psyR)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3863
NCBI Old Locus Tag	PSPTO3863
Name	psyR Synonym: PSPTO3863
Replicon	chromosome
Genomic location	4376977 - 4377720 (+ strand)

Cross-References

RefSeq	NP_793635.1
GI	28871016
Entrez	1185534
INSDC	AAO57330.1
NCBI Locus Tag	PSPTO_3863
NCBI Old Locus Tag	PSPTO3863
UniParc	UPI00000090E7
UniProtKB Acc	Q87YD7
UniProtKB ID	Q87YD7_PSESM
UniRef100	UniRef100_Q87YD7
UniRef50	UniRef50_Q87YD7
UniRef90	UniRef90_Q87YD7

Product

Feature Type	CDS
Coding Frame	1
Product Name	transcriptional regulator PsyR
Synonyms
Evidence for Translation
Charge (pH 7)	9.51
Kyte-Doolittle Hydrophobicity Value	-0.321
Molecular Weight (kDa)	28.3
Isoelectric Point (pI)	9.49

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 276 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001096 (1439 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3863 Search term: psyR Search term: transcriptional regulator PsyR

Human Homologs

References