Pseudomonas syringae pv. tomato DC3000, PSPTO_3720

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3720
NCBI Old Locus Tag	PSPTO3720
Name	Synonym: PSPTO3720
Replicon	chromosome
Genomic location	4199188 - 4200798 (+ strand)

Cross-References

RefSeq	NP_793494.1
GI	28870875
Entrez	1185385
INSDC	AAO57189.1
NCBI Locus Tag	PSPTO_3720
NCBI Old Locus Tag	PSPTO3720
UniParc	UPI000000905F
UniProtKB Acc	Q87YS2
UniProtKB ID	Q87YS2_PSESM
UniRef100	UniRef100_Q87YS2
UniRef50	UniRef50_Q5LMM9
UniRef90	UniRef90_D7HXT7

Product

Feature Type	CDS
Coding Frame	1
Product Name	ABC transporter ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	5.78
Kyte-Doolittle Hydrophobicity Value	-0.065
Molecular Weight (kDa)	58.7
Isoelectric Point (pI)	8.48

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003590 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3720 Search term: ABC transporter ATP-binding protein

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000499543 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48] E-value: 5.1e-18 Percent Identity: 30.7
Ensembl 110, assembly GRCh38.p14	ENSP00000343849 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48] E-value: 5.1e-18 Percent Identity: 30.7
Ensembl 110, assembly GRCh38.p14	ENSP00000436586 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48] E-value: 5.1e-18 Percent Identity: 30.7
Ensembl 110, assembly GRCh38.p14	ENSP00000362492 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48] E-value: 5.1e-18 Percent Identity: 30.7
Ensembl 110, assembly GRCh38.p14	ENSP00000253577 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48] E-value: 5.1e-18 Percent Identity: 30.7
Ensembl 110, assembly GRCh38.p14	ENSP00000496526 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48] E-value: 5.1e-18 Percent Identity: 30.7
Ensembl 110, assembly GRCh38.p14	ENSP00000479985 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48] E-value: 5.1e-18 Percent Identity: 30.7

References