Pseudomonas syringae pv. tomato DC3000, PSPTO_3467

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3467
NCBI Old Locus Tag	PSPTO3467
Name	Synonym: PSPTO3467
Replicon	chromosome
Genomic location	3913277 - 3914383 (+ strand)

Cross-References

RefSeq	NP_793247.1
GI	28870628
Entrez	1185132
INSDC	AAO56942.1
NCBI Locus Tag	PSPTO_3467
NCBI Old Locus Tag	PSPTO3467
UniParc	UPI0000008F6F
UniProtKB Acc	Q87ZG2
UniProtKB ID	Q87ZG2_PSESM
UniRef100	UniRef100_Q87ZG2
UniRef50	UniRef50_G8Q3A3
UniRef90	UniRef90_Q87ZG2

Product

Feature Type	CDS
Coding Frame	1
Product Name	sigma-54 dependent transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7)	3.77
Kyte-Doolittle Hydrophobicity Value	-0.304
Molecular Weight (kDa)	41.4
Isoelectric Point (pI)	7.83

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 450 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003160 (766 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3467 Search term: sigma-54 dependent transcriptional regulator

Human Homologs

References