Pseudomonas syringae pv. tomato DC3000, PSPTO_3464

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3464
NCBI Old Locus Tag	PSPTO3464
Name	Synonym: PSPTO3464
Replicon	chromosome
Genomic location	3908246 - 3910801 (- strand)

Cross-References

RefSeq	NP_793244.1
GI	28870625
Entrez	1185129
INSDC	AAO56939.1
NCBI Locus Tag	PSPTO_3464
NCBI Old Locus Tag	PSPTO3464
UniParc	UPI0000008F6C
UniProtKB Acc	Q87ZG5
UniProtKB ID	Q87ZG5_PSESM
UniRef100	UniRef100_Q87ZG5
UniRef50	UniRef50_Q9I1X7
UniRef90	UniRef90_A0A038G8M0

Product

Feature Type	CDS
Coding Frame	1
Product Name	ATP-dependent DNA ligase
Synonyms
Evidence for Translation
Charge (pH 7)	17.77
Kyte-Doolittle Hydrophobicity Value	-0.435
Molecular Weight (kDa)	94.3
Isoelectric Point (pI)	9.66

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 295 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003336 (490 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3464 Search term: ATP-dependent DNA ligase

Human Homologs

References