Pseudomonas syringae pv. tomato DC3000, PSPTO_3272

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3272
NCBI Old Locus Tag	PSPTO3272
Name	Synonym: PSPTO3272
Replicon	chromosome
Genomic location	3696717 - 3698447 (- strand)

Cross-References

RefSeq	NP_793055.1
GI	28870436
Entrez	1184930
INSDC	AAO56750.1
NCBI Locus Tag	PSPTO_3272
NCBI Old Locus Tag	PSPTO3272
UniParc	UPI0000008EB3
UniProtKB Acc	Q880A0
UniProtKB ID	Q880A0_PSESM
UniRef100	UniRef100_Q880A0
UniRef50	UniRef50_Q9I2N0
UniRef90	UniRef90_Q880A0

Product

Feature Type	CDS
Coding Frame	1
Product Name	hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7)	-5.52
Kyte-Doolittle Hydrophobicity Value	-0.242
Molecular Weight (kDa)	66.2
Isoelectric Point (pI)	6.41

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 34 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003538 (532 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3272

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000499638 FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170] E-value: 1.2e-17 Percent Identity: 25.5
Ensembl 110, assembly GRCh38.p14	ENSP00000499780 FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170] E-value: 1.2e-17 Percent Identity: 25.5
Ensembl 110, assembly GRCh38.p14	ENSP00000499534 FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170] E-value: 1.2e-17 Percent Identity: 25.5
Ensembl 110, assembly GRCh38.p14	ENSP00000499703 FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170] E-value: 1.2e-17 Percent Identity: 25.5
Ensembl 110, assembly GRCh38.p14	ENSP00000354497 FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170] E-value: 1.2e-17 Percent Identity: 25.5
Ensembl 110, assembly GRCh38.p14	ENSP00000484956 FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170] E-value: 1.2e-17 Percent Identity: 25.5

References