Pseudomonas syringae pv. tomato DC3000, PSPTO_2808

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_2808
NCBI Old Locus Tag	PSPTO2808
Name	Synonym: PSPTO2808
Replicon	chromosome
Genomic location	3132407 - 3133357 (+ strand)

Cross-References

RefSeq	NP_792613.1
GI	28869994
Entrez	1184462
INSDC	AAO56308.1
NCBI Locus Tag	PSPTO_2808
NCBI Old Locus Tag	PSPTO2808
UniParc	UPI0000008D0B
UniProtKB Acc	Q881S4
UniProtKB ID	Q881S4_PSESM
UniRef100	UniRef100_Q881S4
UniRef50	UniRef50_Q48I98
UniRef90	UniRef90_Q48I98

Product

Feature Type	CDS
Coding Frame	1
Product Name	LysR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7)	-4.92
Kyte-Doolittle Hydrophobicity Value	0.240
Molecular Weight (kDa)	34.2
Isoelectric Point (pI)	6.04

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown (This protein may have multiple localization sites) Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 500 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004685 (492 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_2808 Search term: LysR family transcriptional regulator

Human Homologs

References