Pseudomonas syringae pv. tomato DC3000, PSPTO_1946

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1946
NCBI Old Locus Tag	PSPTO1946
Name	Synonym: PSPTO1946
Replicon	chromosome
Genomic location	2127827 - 2131402 (+ strand)

Cross-References

RefSeq	NP_791769.1
GI	28869150
Entrez	1183591
INSDC	AAO55464.1
NCBI Locus Tag	PSPTO_1946
NCBI Old Locus Tag	PSPTO1946
UniParc	UPI00000089D5
UniProtKB Acc	Q884Z0
UniProtKB ID	Q884Z0_PSESM
UniRef100	UniRef100_Q884Z0
UniRef50	UniRef50_A0A0B7D6N3
UniRef90	UniRef90_Q48GD0

Product

Feature Type	CDS
Coding Frame	1
Product Name	glycosyl transferase family protein
Synonyms
Evidence for Translation
Charge (pH 7)	-28.19
Kyte-Doolittle Hydrophobicity Value	-0.145
Molecular Weight (kDa)	133.7
Isoelectric Point (pI)	5.32

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 385 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000682 (2121 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1946 Search term: glycosyl transferase family protein

Human Homologs

References