Pseudomonas syringae pv. tomato DC3000, PSPTO_1557

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_1557
NCBI Old Locus TagPSPTO1557
Name
Synonym: PSPTO1557
Replicon chromosome
Genomic location 1719849 - 1720745 (- strand)

Cross-References

RefSeq NP_791382.1
GI 28868763
Entrez 1183194
INSDC AAO55077.1
NCBI Locus Tag PSPTO_1557
NCBI Old Locus Tag PSPTO1557
UniParc UPI0000008856
UniProtKB Acc Q886M0
UniProtKB ID Q886M0_PSESM
UniRef100 UniRef100_A0A038GIZ1
UniRef50 UniRef50_A9L4A5
UniRef90 UniRef90_Q48F82

Product

Feature Type CDS
Coding Frame 1
Product Name
LysR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) 4.95
Kyte-Doolittle Hydrophobicity Value -0.385
Molecular Weight (kDa) 33.9
Isoelectric Point (pI) 8.28

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 472 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002044 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_1557

Human Homologs

References

No references are associated with this feature.