Pseudomonas syringae pv. tomato DC3000, PSPTO_1242

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1242
NCBI Old Locus Tag	PSPTO1242
Name	Synonym: PSPTO1242
Replicon	chromosome
Genomic location	1364622 - 1366103 (- strand)

Cross-References

RefSeq	NP_791072.1
GI	28868453
Entrez	1182878
INSDC	AAO54767.1
NCBI Locus Tag	PSPTO_1242
NCBI Old Locus Tag	PSPTO1242
UniParc	UPI0000008724
UniProtKB Acc	Q887P9
UniProtKB ID	ALG8_PSESM
UniRef100	UniRef100_Q887P9
UniRef50	UniRef50_Q52463
UniRef90	UniRef90_Q887P9

Product

Feature Type	CDS
Coding Frame	1
Product Name	alginate biosynthesis protein Alg8
Synonyms
Evidence for Translation
Charge (pH 7)	23.27
Kyte-Doolittle Hydrophobicity Value	0.214
Molecular Weight (kDa)	56.0
Isoelectric Point (pI)	10.35

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 10 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002125 (492 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1242 Search term: alginate biosynthesis protein Alg8

Human Homologs

References