Pseudomonas syringae pv. tomato DC3000, PSPTO_1209

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1209
NCBI Old Locus Tag	PSPTO1209
Name	Synonym: PSPTO1209
Replicon	chromosome
Genomic location	1325302 - 1325808 (- strand)

Cross-References

RefSeq	NP_791041.1
GI	28868422
Entrez	1182845
INSDC	AAO54736.1
NCBI Locus Tag	PSPTO_1209
NCBI Old Locus Tag	PSPTO1209
UniParc	UPI0000008708
UniProtKB Acc	Q887S7
UniProtKB ID	Q887S7_PSESM
UniRef100	UniRef100_Q887S7
UniRef50	UniRef50_C1DJ03
UniRef90	UniRef90_Q887S7

Product

Feature Type	CDS
Coding Frame	1
Product Name	RNA polymerase sigma-70 family protein
Synonyms
Evidence for Translation
Charge (pH 7)	1.79
Kyte-Doolittle Hydrophobicity Value	-0.029
Molecular Weight (kDa)	18.9
Isoelectric Point (pI)	7.61

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 182 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000463 (1798 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1209 Search term: RNA polymerase sigma-70 family protein

Human Homologs

References