Pseudomonas syringae pv. tomato DC3000, PSPTO_1072

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1072
NCBI Old Locus Tag	PSPTO1072
Name	Synonym: PSPTO1072
Replicon	chromosome
Genomic location	1171573 - 1172688 (- strand)

Cross-References

RefSeq	NP_790906.1
GI	28868287
Entrez	1182707
INSDC	AAO54601.1
NCBI Locus Tag	PSPTO_1072
NCBI Old Locus Tag	PSPTO1072
UniParc	UPI0000008689
UniProtKB Acc	Q888F4
UniProtKB ID	Q888F4_PSESM
UniRef100	UniRef100_Q888F4
UniRef50	UniRef50_Q8PCT6
UniRef90	UniRef90_Q888F4

Product

Feature Type	CDS
Coding Frame	1
Product Name	DegT/DnrJ/EryC1/StrS family aminotransferase
Synonyms
Evidence for Translation
Charge (pH 7)	-5.78
Kyte-Doolittle Hydrophobicity Value	0.081
Molecular Weight (kDa)	39.9
Isoelectric Point (pI)	6.00

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 535 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002114 (610 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1072 Search term: DegT/DnrJ/EryC1/StrS family aminotransferase

Human Homologs

References