Pseudomonas syringae pv. tomato DC3000, PSPTO_0656 (ssB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_0656
NCBI Old Locus TagPSPTO0656
Name
ssB
Synonym: PSPTO0656
Replicon chromosome
Genomic location 710392 - 710961 (+ strand)

Cross-References

RefSeq NP_790503.1
GI 28867884
Entrez 1182276
INSDC AAO54198.1
NCBI Locus Tag PSPTO_0656
NCBI Old Locus Tag PSPTO0656
UniParc UPI0000008505
UniProtKB Acc Q889U1
UniProtKB ID SSB_PSESM
UniRef100 UniRef100_Q889U1
UniRef50 UniRef50_Q87LA3
UniRef90 UniRef90_Q889U1

Product

Feature Type CDS
Coding Frame 1
Product Name
single-stranded DNA-binding protein
Synonyms
Evidence for Translation
Charge (pH 7) -0.80
Kyte-Doolittle Hydrophobicity Value -1.057
Molecular Weight (kDa) 21.0
Isoelectric Point (pI) 5.96

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 586 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001478 (538 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_0656
Search term: ssB

Human Homologs

Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 3.7e-16
Percent Identity: 39.1
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 3.7e-16
Percent Identity: 39.1
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 3.7e-16
Percent Identity: 39.1
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 3.7e-16
Percent Identity: 39.1
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 3.7e-16
Percent Identity: 39.1
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 3.7e-16
Percent Identity: 39.1
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 3.7e-16
Percent Identity: 39.1

References

No references are associated with this feature.