Pseudomonas syringae pv. tomato DC3000, PSPTO_0641 (rplF)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0641
NCBI Old Locus Tag	PSPTO0641
Name	rplF Synonym: PSPTO0641
Replicon	chromosome
Genomic location	698710 - 699243 (+ strand)

Cross-References

RefSeq	NP_790488.1
GI	28867869
Entrez	1182261
INSDC	AAO54183.1
NCBI Locus Tag	PSPTO_0641
NCBI Old Locus Tag	PSPTO0641
UniParc	UPI00000084F6
UniProtKB Acc	Q889V6
UniProtKB ID	RL6_PSESM
UniRef100	UniRef100_Q889V6
UniRef50	UniRef50_P49548
UniRef90	UniRef90_Q889V6

Product

Feature Type	CDS
Coding Frame	1
Product Name	50S ribosomal protein L6
Synonyms
Evidence for Translation
Charge (pH 7)	9.47
Kyte-Doolittle Hydrophobicity Value	-0.352
Molecular Weight (kDa)	19.3
Isoelectric Point (pI)	10.50

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 642 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001462 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0641 Search term: rplF Search term: 50S ribosomal protein L6

Human Homologs

References