Pseudomonas syringae pv. tomato DC3000, PSPTO_0443 (betA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_0443
NCBI Old Locus TagPSPTO0443
Name
betA
Synonym: PSPTO0443
Replicon chromosome
Genomic location 487268 - 488974 (+ strand)

Cross-References

RefSeq NP_790292.1
GI 28867673
Entrez 1182052
INSDC AAO53987.1
NCBI Locus Tag PSPTO_0443
NCBI Old Locus Tag PSPTO0443
UniParc UPI0000008437
UniProtKB Acc Q88AE7
UniProtKB ID BETA_PSESM
UniRef100 UniRef100_Q88AE7
UniRef50 UniRef50_Q8FKI9
UniRef90 UniRef90_Q88AE7

Product

Feature Type CDS
Coding Frame 1
Product Name
choline dehydrogenase
Synonyms
Evidence for Translation
Charge (pH 7) -6.83
Kyte-Doolittle Hydrophobicity Value -0.460
Molecular Weight (kDa) 62.8
Isoelectric Point (pI) 6.17

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 218 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004937 (526 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_0443
Search term: betA

Human Homologs

Ensembl 110, assembly GRCh38.p14
choline dehydrogenase [Source:HGNC Symbol;Acc:HGNC:24288]
E-value: 5.5e-148
Percent Identity: 50.4

References

No references are associated with this feature.