Pseudomonas syringae pv. tomato DC3000, PSPTO_0334 (algB)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0334
NCBI Old Locus Tag	PSPTO0334
Name	algB Synonym: PSPTO0334
Replicon	chromosome
Genomic location	363589 - 364935 (+ strand)

Cross-References

RefSeq	NP_790184.1
GI	28867565
Entrez	1181943
INSDC	AAO53879.1
NCBI Locus Tag	PSPTO_0334
NCBI Old Locus Tag	PSPTO0334
UniParc	UPI00000083CB
UniProtKB Acc	Q88AQ2
UniProtKB ID	ALGB_PSESM
UniRef100	UniRef100_Q88AQ2
UniRef50	UniRef50_P23747
UniRef90	UniRef90_Q88AQ2

Product

Feature Type	CDS
Coding Frame	1
Product Name	alginate biosynthesis transcriptional regulator AlgB
Synonyms
Evidence for Translation
Charge (pH 7)	-6.47
Kyte-Doolittle Hydrophobicity Value	-0.209
Molecular Weight (kDa)	49.5
Isoelectric Point (pI)	5.57

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 619 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG005023 (531 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0334 Search term: algB Search term: alginate biosynthesis transcriptional regulator AlgB

Human Homologs

References