Pseudomonas syringae pv. tomato DC3000, PSPTO_0071

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0071
NCBI Old Locus Tag	PSPTO0071
Name	Synonym: PSPTO0071
Replicon	chromosome
Genomic location	93607 - 94344 (- strand)

Cross-References

RefSeq	NP_789930.1
GI	28867311
Entrez	1181679
INSDC	AAO53625.1
NCBI Locus Tag	PSPTO_0071
NCBI Old Locus Tag	PSPTO0071
UniParc	UPI00000082D4
UniProtKB Acc	Q88BE6
UniProtKB ID	Q88BE6_PSESM
UniRef100	UniRef100_A0A038GMK8
UniRef50	UniRef50_Q9HTL8
UniRef90	UniRef90_Q4ZZZ2

Product

Feature Type	CDS
Coding Frame	1
Product Name	lipoprotein
Synonyms
Evidence for Translation
Charge (pH 7)	-8.37
Kyte-Doolittle Hydrophobicity Value	-0.377
Molecular Weight (kDa)	26.4
Isoelectric Point (pI)	4.61

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in one genus

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004909 (494 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0071 Search term: lipoprotein

Human Homologs

References