Pseudomonas mendocina NK-01, MDS_4838

Gene Feature Overview

Strain	Pseudomonas mendocina NK-01 GCF_000204295.1|latest
Locus Tag	MDS_4838
Name
Replicon	chromosome
Genomic location	5298306 - 5298974 (+ strand)

Cross-References

RefSeq	YP_004382621.1
GI	330505752
Entrez	10459620
INSDC	AEB60869.1
NCBI Locus Tag	MDS_4838
UniParc	UPI000206DF03
UniProtKB Acc	F4DSN9
UniProtKB ID	F4DSN9_PSEMN
UniRef100	UniRef100_F4DSN9
UniRef50	UniRef50_G8PX42
UniRef90	UniRef90_F4DSN9

Product

Feature Type	CDS
Coding Frame	1
Product Name	binding-protein-dependent transport system inner membrane protein
Synonyms
Evidence for Translation
Charge (pH 7)	-1.53
Kyte-Doolittle Hydrophobicity Value	0.910
Molecular Weight (kDa)	24.2
Isoelectric Point (pI)	5.74

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 383 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG005043 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: MDS_4838 Search term: binding-protein-dependent transport system inner membrane protein

Human Homologs

References