Pseudomonas mendocina NK-01, MDS_3135

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_3135
Name
Replicon chromosome
Genomic location 3458514 - 3459566 (- strand)

Cross-References

RefSeq YP_004380918.1
GI 330504049
Entrez 10457917
INSDC AEB59166.1
NCBI Locus Tag MDS_3135
UniParc UPI000206DCB1
UniProtKB Acc F4DM44
UniProtKB ID F4DM44_PSEMN
UniRef100 UniRef100_F4DM44
UniRef50 UniRef50_Q88NK4
UniRef90 UniRef90_A4XT24

Product

Feature Type CDS
Coding Frame 1
Product Name
DNA polymerase IV
Synonyms
Evidence for Translation
Charge (pH 7) 4.23
Kyte-Doolittle Hydrophobicity Value -0.319
Molecular Weight (kDa) 39.6
Isoelectric Point (pI) 8.15

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 520 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000889 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_3135
Search term: DNA polymerase IV

Human Homologs

Ensembl 110, assembly GRCh38.p14
DNA polymerase kappa [Source:HGNC Symbol;Acc:HGNC:9183]
E-value: 2.1e-41
Percent Identity: 32.1
Ensembl 110, assembly GRCh38.p14
DNA polymerase kappa [Source:HGNC Symbol;Acc:HGNC:9183]
E-value: 2.1e-41
Percent Identity: 32.1
Ensembl 110, assembly GRCh38.p14
DNA polymerase kappa [Source:HGNC Symbol;Acc:HGNC:9183]
E-value: 2.1e-41
Percent Identity: 32.1
Ensembl 110, assembly GRCh38.p14
DNA polymerase kappa [Source:HGNC Symbol;Acc:HGNC:9183]
E-value: 2.1e-41
Percent Identity: 32.1
Ensembl 110, assembly GRCh38.p14
DNA polymerase kappa [Source:HGNC Symbol;Acc:HGNC:9183]
E-value: 2.1e-41
Percent Identity: 32.1
Ensembl 110, assembly GRCh38.p14
DNA polymerase kappa [Source:HGNC Symbol;Acc:HGNC:9183]
E-value: 2.1e-41
Percent Identity: 32.1

References

No references are associated with this feature.