Pseudomonas mendocina NK-01, MDS_2706

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_2706
Name
Replicon chromosome
Genomic location 2967956 - 2968780 (+ strand)

Cross-References

RefSeq YP_004380489.1
GI 330503620
Entrez 10457488
INSDC AEB58737.1
NCBI Locus Tag MDS_2706
UniParc UPI000206DF6A
UniProtKB Acc F4DXC8
UniProtKB ID F4DXC8_PSEMN
UniRef100 UniRef100_F4DXC8
UniRef50 UniRef50_Q65F65
UniRef90 UniRef90_F4DXC8

Product

Feature Type CDS
Coding Frame 1
Product Name
ABC transporter
Synonyms
Evidence for Translation
Charge (pH 7) -5.96
Kyte-Doolittle Hydrophobicity Value 0.176
Molecular Weight (kDa) 29251.4
Isoelectric Point (pI) 5.78

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001543 (890 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_2706
Search term: ABC transporter

Human Homologs

Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 11 [Source:HGNC Symbol;Acc:HGNC:42]
E-value: 1.0e-22
Percent Identity: 34.5

References

No references are associated with this feature.