Pseudomonas mendocina NK-01, MDS_1312

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_1312
Name
Replicon chromosome
Genomic location 1433847 - 1434347 (+ strand)

Cross-References

RefSeq YP_004379095.1
GI 330502226
Entrez 10456094
INSDC AEB57343.1
NCBI Locus Tag MDS_1312
UniParc UPI0000E7794F
UniProtKB Acc F4DVD7
UniProtKB ID F4DVD7_PSEMN
UniRef100 UniRef100_F4DVD7
UniRef50 UniRef50_Q1I6F5
UniRef90 UniRef90_Q1I6F5

Product

Feature Type CDS
Coding Frame 1
Product Name
OmpA domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7) -3.55
Kyte-Doolittle Hydrophobicity Value -0.340
Molecular Weight (kDa) 17757.7
Isoelectric Point (pI) 5.07

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 402 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000938 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_1312

Human Homologs

References

No references are associated with this feature.