Pseudomonas aeruginosa AZPAE14817, NR36_RS05860
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas aeruginosa AZPAE14817
GCF_000795165.1|latest |
| Locus Tag |
NR36_RS05860
|
| Name |
|
| Replicon | contig_4 |
| Genomic location | 47093 - 48007 (+ strand) |
Cross-References
| RefSeq | WP_003089829.1 |
| GI | 489180348 |
| NCBI Locus Tag | NR36_RS05860 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
LysR family transcriptional regulator
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 0.70 |
| Kyte-Doolittle Hydrophobicity Value | -0.066 |
| Molecular Weight (kDa) | 33.4 |
| Isoelectric Point (pI) | 7.61 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AMR gene predictions from CARD database
Identified using the Resistance Gene Identifier (RGI)
| Model Name | Definition | Accession | Model Type (?) | SNP | Cutoff | Bit Score | Percent Identity | CARD Version |
| MexT | MexT is a LysR-type transcriptional activator that positively regulates the expression of MexEF-OprN, OprD, and MexS. [PMID:11040437, PMID:26833155, PMID:10515918] | ARO:3000814 | protein overexpression model | Strict | 524.6 | 99.63 | 3.2.5 |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 6L33 | TRANSCRIPTION | 10/08/19 | Crystal structure of the regulatory domain of MexT, a transcriptional activator in Pseudomonas aeruginosa | Pseudomonas aeruginosa | 2 | X-RAY DIFFRACTION | 100.0 |
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG001179 (1943 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: NR36_RS05860
Search term: LysR family transcriptional regulator
|
Human Homologs
References
No references are associated with this feature.