Pseudomonas stutzeri DSM 4166, PSTAA_0738 (rplF)

Gene Feature Overview

Strain	Pseudomonas stutzeri DSM 4166 GCF_000195105.1|latest
Locus Tag	PSTAA_0738
Name	rplF
Replicon	chromosome
Genomic location	813103 - 813582 (+ strand)

Cross-References

RefSeq	YP_005937390.1
GI	386019366
Entrez	12527880
INSDC	AEA82648.1
NCBI Locus Tag	PSTAA_0738
UniParc	UPI00020475DE
UniProtKB Acc	F2MVX5
UniProtKB ID	F2MVX5_PSEU6
UniRef100	UniRef100_A4VHP5
UniRef50	UniRef50_A4VHP5
UniRef90	UniRef90_A4VHP5

Product

Feature Type	CDS
Coding Frame	1
Product Name	50S ribosomal protein L6
Synonyms
Evidence for Translation
Charge (pH 7)	7.47
Kyte-Doolittle Hydrophobicity Value	-0.445
Molecular Weight (kDa)	17259.7
Isoelectric Point (pI)	10.35

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
7UNW	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.6	ELECTRON MICROSCOPY	90.6
7UNV	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.7	ELECTRON MICROSCOPY	90.6
7UNU	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.9	ELECTRON MICROSCOPY	90.6
6SPD	RIBOSOME	09/01/19	Pseudomonas aeruginosa 50s ribosome from a clinical isolate	Pseudomonas aeruginosa	3.28	ELECTRON MICROSCOPY	90.4
7UNR	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.9	ELECTRON MICROSCOPY	90.6
6SPG	RIBOSOME	09/01/19	Pseudomonas aeruginosa 70s ribosome from a clinical isolate	Pseudomonas aeruginosa	3.34	ELECTRON MICROSCOPY	90.4

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 636 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001462 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSTAA_0738 Search term: rplF Search term: 50S ribosomal protein L6

Human Homologs

References