Pseudomonas syringae pv. syringae B728a, Psyr_4533 (rplF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas syringae pv. syringae B728a (Feil et al., 2005)
GCF_000012245.1|latest
Locus Tag
Psyr_4533
Name
rplF
Replicon chromosome
Genomic location 5395746 - 5396279 (- strand)

Cross-References

RefSeq YP_237601.1
GI 66047760
Entrez 3370073
INSDC AAY39563.1
NCBI Locus Tag Psyr_4533
UniParc UPI00003953D6
UniProtKB Acc Q4ZMQ9
UniProtKB ID RL6_PSEU2
UniRef100 UniRef100_Q4ZMQ9
UniRef50 UniRef50_P49548
UniRef90 UniRef90_Q889V6

Product

Feature Type CDS
Coding Frame 1
Product Name
50S ribosomal protein L6
Synonyms
Evidence for Translation
Charge (pH 7) 10.47
Kyte-Doolittle Hydrophobicity Value -0.301
Molecular Weight (kDa) 19.2
Isoelectric Point (pI) 10.60

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 645 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001462 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Psyr_4533
Search term: rplF

Human Homologs

References

No references are associated with this feature.