Pseudomonas syringae pv. syringae B728a, Psyr_0017
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas syringae pv. syringae B728a (Feil et al., 2005)
GCF_000012245.1|latest |
| Locus Tag |
Psyr_0017
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 20699 - 22045 (- strand) |
Cross-References
| RefSeq | YP_233129.1 |
| GI | 66043288 |
| Entrez | 3365492 |
| NCBI Locus Tag | Psyr_0017 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
rRNA SAM-dependent methyltransferase
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -1.85 |
| Kyte-Doolittle Hydrophobicity Value | -0.098 |
| Molecular Weight (kDa) | 48389.9 |
| Isoelectric Point (pI) | 6.67 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 582 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000017 (536 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: Psyr_0017
Search term: rRNA SAM-dependent methyltransferase
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value:
1.9e-26
Percent Identity:
32.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value:
1.9e-26
Percent Identity:
32.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value:
1.9e-26
Percent Identity:
32.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value:
1.9e-26
Percent Identity:
32.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value:
1.9e-26
Percent Identity:
32.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value:
1.9e-26
Percent Identity:
32.4
|
References
No references are associated with this feature.