Pseudomonas putida GB-1, PputGB1_2944

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida GB-1
GCF_000019125.1|latest
Locus Tag
PputGB1_2944
Name
Replicon chromosome
Genomic location 3293465 - 3295114 (- strand)

Cross-References

RefSeq YP_001669172.1
GI 167033941
Entrez 5870729
INSDC ABY98836.1
NCBI Locus Tag PputGB1_2944
UniParc UPI0000F25DC4
UniProtKB Acc B0KV04
UniProtKB ID B0KV04_PSEPG
UniRef100 UniRef100_B0KV04
UniRef50 UniRef50_Q9I2N0
UniRef90 UniRef90_Q88J11

Product

Feature Type CDS
Coding Frame 1
Product Name
VRR-NUC domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7) -5.76
Kyte-Doolittle Hydrophobicity Value -0.261
Molecular Weight (kDa) 63253.0
Isoelectric Point (pI) 6.35

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 34 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003538 (532 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PputGB1_2944

Human Homologs

Ensembl 110, assembly GRCh38.p14
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value: 8.0e-19
Percent Identity: 34.9
Ensembl 110, assembly GRCh38.p14
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value: 8.0e-19
Percent Identity: 34.9
Ensembl 110, assembly GRCh38.p14
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value: 8.0e-19
Percent Identity: 34.9
Ensembl 110, assembly GRCh38.p14
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value: 8.0e-19
Percent Identity: 34.9
Ensembl 110, assembly GRCh38.p14
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value: 8.0e-19
Percent Identity: 34.9
Ensembl 110, assembly GRCh38.p14
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value: 8.0e-19
Percent Identity: 34.9

References

No references are associated with this feature.