Pseudomonas fluorescens SBW25, PFLU0258

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas fluorescens SBW25
GCF_000009225.2|latest
Locus Tag
PFLU0258
Name
Replicon chromosome
Genomic location 282894 - 285218 (- strand)

Cross-References

RefSeq YP_002869942.1
GI 229587823
Entrez 7821250
INSDC CAY46537.1
UniParc UPI00019D99E0
UniProtKB Acc C3KE58
UniProtKB ID C3KE58_PSEFS
UniRef100 UniRef100_C3KE58
UniRef50 UniRef50_Q45388
UniRef90 UniRef90_D7HUW6

Product

Feature Type CDS
Coding Frame 1
Product Name
putative S1 RNA-binding domain protein
Synonyms
Evidence for Translation
Charge (pH 7) -5.20
Kyte-Doolittle Hydrophobicity Value -0.308
Molecular Weight (kDa) 84809.0
Isoelectric Point (pI) 6.43

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 596 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004785 (532 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLU0258

Human Homologs

Ensembl 110, assembly GRCh38.p14
S1 RNA binding domain 1 [Source:HGNC Symbol;Acc:HGNC:25521]
E-value: 5.0e-99
Percent Identity: 32.8

References

No references are associated with this feature.