Pseudomonas fluorescens F113, PSF113_0177 (gabT)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas fluorescens F113
GCF_000237065.1|latest
Locus Tag
PSF113_0177
Name
gabT
Replicon chromosome
Genomic location 192380 - 193657 (+ strand)

Cross-References

RefSeq YP_005205603.1
GI 378948115
EC Number 1.2.1.16
EC Number 2.6.1.19
EC Number 2.6.1.22
Entrez 11828254
INSDC AEV60208.1
NCBI Locus Tag PSF113_0177
UniParc UPI00023B3878
UniProtKB Acc G8PZ77
UniProtKB ID G8PZ77_PSEFL
UniRef100 UniRef100_G8PZ77
UniRef50 UniRef50_P22256
UniRef90 UniRef90_G8PZ77

Product

Feature Type CDS
Coding Frame 1
Product Name
GabT protein
Synonyms
Evidence for Translation
Charge (pH 7) -3.07
Kyte-Doolittle Hydrophobicity Value 0.230
Molecular Weight (kDa) 44870.7
Isoelectric Point (pI) 6.42

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 638 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000263 (534 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSF113_0177
Search term: gabT
Search term: GabT protein

Human Homologs

Ensembl 110, assembly GRCh38.p14
ornithine aminotransferase [Source:HGNC Symbol;Acc:HGNC:8091]
E-value: 1.8e-42
Percent Identity: 30.2

References

No references are associated with this feature.