Pseudomonas fluorescens Pf0-1, Pfl01_1801 (ligA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas fluorescens Pf0-1
GCF_000012445.1|latest
Locus Tag
Pfl01_1801
Name
ligA
Replicon chromosome
Genomic location 2010582 - 2012939 (+ strand)

Cross-References

RefSeq YP_347533.1
GI 77458028
EC Number 6.5.1.2
Entrez 3716561
INSDC ABA73544.1
NCBI Locus Tag Pfl01_1801
UniParc UPI00003C7548
UniProtKB Acc Q3KFB2
UniProtKB ID DNLJ_PSEPF
UniRef100 UniRef100_Q3KFB2
UniRef50 UniRef50_Q9KTD1
UniRef90 UniRef90_Q3KFB2

Product

Feature Type CDS
Coding Frame 1
Product Name
NAD-dependent DNA ligase LigA
Synonyms
Evidence for Translation
Charge (pH 7) -21.91
Kyte-Doolittle Hydrophobicity Value -0.186
Molecular Weight (kDa) 85670.8
Isoelectric Point (pI) 5.27

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results Analysis not done

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003829 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Pfl01_1801
Search term: ligA

Human Homologs

References

No references are associated with this feature.