Pseudomonas aeruginosa 39016, PA39016_004240008
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas aeruginosa 39016 - Assembly GCF_000148745.1
GCF_000148745.1|latest |
| Locus Tag |
PA39016_004240008
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 139916 - 140986 (+ strand) |
Cross-References
| RefSeq | WP_003083872.1 |
| GI | 489174338 |
| NCBI Locus Tag | PA39016_004240008 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
RND transporter
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 2.22 |
| Kyte-Doolittle Hydrophobicity Value | -0.241 |
| Molecular Weight (kDa) | 38.3 |
| Isoelectric Point (pI) | 9.12 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AMR gene predictions from CARD database
Identified using the Resistance Gene Identifier (RGI)
| Model Name | Definition | Accession | Model Type (?) | SNP | Cutoff | Bit Score | Percent Identity | CARD Version |
| TriB | TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. [PMID:17720796] | ARO:3003680 | protein homolog model | Perfect | 667.5 | 100.0 | 3.2.5 |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 6VEJ | TRANSPORT PROTEIN | 01/02/20 | TriABC transporter from Pseudomonas aeruginosa | Pseudomonas aeruginosa | 4.5 | ELECTRON MICROSCOPY | 98.5 |
Pathogen Association Analysis
| Results | Analysis not done |
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000155 (490 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PA39016_004240008
Search term: RND transporter
|
Human Homologs
References
No references are associated with this feature.