Pseudomonas sp. GM30, PMI25_001146

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas sp. GM30
GCF_000282275.2|latest
Locus Tag
PMI25_001146
Name
Replicon ctg3
Genomic location 260178 - 263366 (+ strand)

Cross-References

RefSeq WP_007963553.1
GI 495238788
INSDC EUB84769.1
NCBI Locus Tag PMI25_001146
UniParc UPI0002701C4B
UniProtKB Acc W6VK15
UniProtKB ID W6VK15_9PSED
UniRef100 UniRef100_W6VK15
UniRef50 UniRef50_Q880Q4
UniRef90 UniRef90_Q880Q4

Product

Feature Type CDS
Coding Frame 1
Product Name
transporter
Synonyms
Evidence for Translation
Charge (pH 7) -8.67
Kyte-Doolittle Hydrophobicity Value 0.303
Molecular Weight (kDa) 115.1
Isoelectric Point (pI) 5.64

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AMR gene predictions from CARD database

Identified using the Resistance Gene Identifier (RGI)

Model Name Definition Accession Model Type (?) SNP Cutoff Bit Score Percent Identity CARD Version
adeF AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. [PMID:20696879] ARO:3000777 protein homolog model Strict 1342.0 66.67 3.2.5

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000417 (2093 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PMI25_001146
Search term: transporter

Human Homologs

References

No references are associated with this feature.