Pseudomonas sp. HPB0071, HMPREF1487_08912

Gene Feature Overview

Strain	Pseudomonas sp. HPB0071 GCF_000478505.2|latest
Locus Tag	HMPREF1487_08912
NCBI Locus Tag	HMPREF1487_RS22510
Name
Replicon	scaffold_2
Genomic location	656588 - 659710 (+ strand)

Cross-References

RefSeq	WP_010799068.1
GI	498498347
INSDC	ENA28336.1
NCBI Locus Tag	HMPREF1487_RS22510
NCBI Old Locus Tag	HMPREF1487_08912
UniParc	UPI0002C9D5A6
UniProtKB Acc	N2IXH6
UniProtKB ID	N2IXH6_9PSED
UniRef100	UniRef100_N2IXH6
UniRef50	UniRef50_P31224
UniRef90	UniRef90_N2IXH6

Product

Feature Type	CDS
Coding Frame	1
Product Name	hydrophobe/amphiphile efflux-1 (HAE1) family RND transporter
Synonyms
Evidence for Translation
Charge (pH 7)	-11.92
Kyte-Doolittle Hydrophobicity Value	0.341
Molecular Weight (kDa)	111.5
Isoelectric Point (pI)	5.47

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AMR gene predictions from CARD database

Identified using the Resistance Gene Identifier (RGI)

Model Name	Definition	Accession	Model Type (?)	SNP	Cutoff	Bit Score	Percent Identity	CARD Version
adeF	AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. [PMID:20696879]	ARO:3000777	protein homolog model		Strict	777.3	44.19	3.2.5

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000417 (2093 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: HMPREF1487_08912 Search term: hydrophobe/amphiphile efflux-1 (HAE1) family RND transporter

Human Homologs

References