Pseudomonas sp. HPB0071, HMPREF1487_08158

Gene Feature Overview

Strain	Pseudomonas sp. HPB0071 GCF_000478505.2|latest
Locus Tag	HMPREF1487_08158
NCBI Locus Tag	HMPREF1487_RS18970
Name
Replicon	scaffold_1
Genomic location	4086993 - 4089173 (- strand)

Cross-References

RefSeq	WP_010798322.1
GI	498497595
INSDC	ENA29904.1
NCBI Locus Tag	HMPREF1487_RS18970
NCBI Old Locus Tag	HMPREF1487_08158
UniParc	UPI0002C9F355
UniProtKB Acc	N2ISQ4
UniProtKB ID	N2ISQ4_9PSED
UniRef100	UniRef100_N2ISQ4
UniRef50	UniRef50_Q9HYT3
UniRef90	UniRef90_N2ISQ4

Product

Feature Type	CDS
Coding Frame	1
Product Name	diguanylate cyclase (GGDEF) domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7)	-3.93
Kyte-Doolittle Hydrophobicity Value	0.180
Molecular Weight (kDa)	80.4
Isoelectric Point (pI)	6.66

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002307 (481 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: HMPREF1487_08158 Search term: diguanylate cyclase (GGDEF) domain-containing protein

Human Homologs

References